Insight 24

EU AI Act and German Pharma R&D: The 2026–2027 Compliance Cliffs

This article provides general information and is not legal advice.

Abstract: For a US pharmaceutical company with research facilities in Germany, the EU AI Act (Regulation (EU) 2024/1689) already binds in part: its prohibited practices are enforceable, and its obligations for general-purpose AI models, in force since 2 August 2025, reach a company that modifies a foundation model far enough to become its provider, while the high-risk requirements arrive in two phases, for standalone Annex III AI Act systems from 2 August 2026 and for AI that is or sits inside a medical device under Art. 6(1) AI Act from 2 August 2027. Which phase a given research system falls into, and whether the Act reaches it at all while it stays in the laboratory, turns on how the system is used rather than how it was built. For AI-enabled devices the AI Act's requirements are checked inside the MDR conformity assessment, a dual burden that existing compliance structures and the small pool of qualified notified bodies are not set up to carry.
Plain Language Summary

The EU AI Act (Regulation (EU) 2024/1689) is the EU's horizontal law on artificial intelligence; it sorts AI systems into risk tiers, and the nearest US reference point, FDA's draft guidance on AI in drug development, is non-binding and works differently. A system built and used purely for scientific research can sit outside the Act, but the exclusion ends once the system is tested on patients or placed on the market, and a research tool later used for a regulated purpose is judged by that use. High-risk obligations then arrive in two phases, from August 2026 for standalone systems listed in Annex III AI Act and from August 2027 for AI that is or forms part of a medical device, where the AI Act's requirements are checked inside the conformity assessment under the EU Medical Device Regulation (MDR). For a US pharmaceutical company running research in Germany, the open questions are which of its systems the Act reaches, on which timeline, and how the two regimes stack.

Contents
  1. Risk Classification
  2. Scope and the R&D Exemption
  3. High-Risk Compliance Requirements
  4. MDR/AI Act Dual Compliance
  5. General-Purpose AI Obligations
  6. Liability Beyond Fines
  7. The German Implementation Context
  8. The FDA and Swiss Frames
  9. Building the Compliance Program

AI systems are embedded across the pharmaceutical R&D pipeline, from target identification through pharmacovigilance signal detection. Regulatory competence has not kept pace: a 2024 survey of life-science professionals found only 9% reported knowing the EU and US AI regulatory frameworks well, with 35% reporting no understanding at all.1Pistoia Alliance, 'Pistoia Alliance Survey Exposes AI Knowledge Gap' (February 2024), reporting that 9% of 125 life-science professionals surveyed self-reported knowing EU and US AI regulations well; cf. Deloitte Insights, 'The Rise of Artificial Intelligence in Biopharma' (accessed February 2026) (documenting near-ubiquitous AI/ML deployment across large-cap pharmaceutical R&D pipelines). That gap collides with the EU AI Act's August 2026 compliance deadline.

1. Risk Classification: Where Pharma R&D Systems Fall

The AI Act (Regulation (EU) 2024/1689) establishes four risk tiers: unacceptable risk (prohibited), high risk, limited risk (transparency obligations), and minimal risk (no specific obligations).2Regulation (EU) 2024/1689 of the European Parliament and of the Council of 13 June 2024 laying down harmonised rules on artificial intelligence [2024] OJ L 2024/1689. The classification determines the compliance burden, and for pharmaceutical R&D it is harder to settle than it first appears.

The most consequential category for pharma is "high-risk." Art. 6(1) AI Act classifies an AI system as high-risk where it is, or is a safety component of, a product covered by Annex I AI Act (which lists the MDR and IVDR) and that product is required to undergo third-party conformity assessment under the Annex I legislation, a threshold met by virtually all MDR Class IIa-and-above and IVDR Class B-and-above devices.3AI Act (n 2), Art. 6(1) and Annex I, Section A, points 11–12 (MDR and IVDR); cf. AIB 2025-1 / MDCG 2025-6, Interplay between the Medical Devices Regulation (MDR) & In vitro Diagnostic Medical Devices Regulation (IVDR) and the Artificial Intelligence Act (AIA) (June 2025). That test appears tractable on its face, until applied to the reality of pharmaceutical R&D, where the boundary between a medical device and an internal research tool turns on intended use, not on how the tool was built. Art. 6(1) AI Act applies from 2 August 2027 under Art. 113(c) AI Act, one year after the August 2026 deadline for standalone high-risk systems under Annex III AI Act, but the classification analysis cannot wait for that later date: determining which pathway applies is itself a prerequisite for compliance planning. A clinical decision support algorithm built as an internal workflow tool may, depending on the claims made about its outputs and its proximity to patient-facing decisions, cross the threshold into medical device territory. The joint guidance of the MDCG and the European Artificial Intelligence Board on how the AI Act interacts with the MDR and IVDR (AIB 2025-1 / MDCG 2025-6) acknowledges that threshold but does not resolve it.

The classification challenge extends beyond medical devices. Art. 6(2) and Annex III AI Act capture standalone high-risk AI systems in eight categories, some of which intersect with pharmaceutical operations at the margins (notably biometric processing under Annex III(1) AI Act, and AI used for public-authority evaluation of eligibility for healthcare benefits under Annex III(5)(a) AI Act or for emergency healthcare triage under Annex III(5)(d) AI Act). Pharmaceutical R&D is not explicitly listed in Annex III AI Act, but the functional scope of several Annex III categories reaches into drug development in ways that depend on how the system is used, not how it was designed. The Annex III AI Act classification is not absolute: Art. 6(3) AI Act carves out systems that do not pose a significant risk of harm to health, safety, or fundamental rights, subject to four enumerated gating conditions (narrow procedural task, improving a previously completed human activity, detecting decision-making patterns subject to proper human review and not replacing the prior human assessment, or preparatory tasks for Annex III assessments). The umbrella "significant risk" standard is not statutorily defined, however, leaving the carve-out's scope unsettled at the margin. One line in that provision is fixed rather than fuzzy: an Annex III AI Act system that performs profiling of natural persons is always high-risk, and the carve-out is unavailable to it.4AI Act (n 2), Art. 6(2) and Annex III (pharma-adjacent points: 1 biometrics; 5(a) eligibility for essential public assistance benefits and services, including healthcare; 5(d) emergency healthcare triage); Art. 6(3) and its closing subparagraph (an Annex III system performing profiling of natural persons is always high-risk); "significant risk" is not defined in Art. 3 AI Act.

AI Act Classification and Dual Compliance for Pharma R&D Diagram showing how pharma AI systems enter high-risk classification through either the medical device pathway (Art. 6(1) AI Act via MDR/IVDR) or the standalone pathway (Art. 6(2) AI Act via Annex III), and how each triggers overlapping compliance obligations under AI Act, MDR, GMP, and GCP. AI Act Classification and Dual Compliance Overlay for Pharma R&D Pharma R&D AI Systems Clinical decision support Patient recruitment algorithms Pharmacovigilance signal detection Diagnostic / companion Dx AI Near-ubiquitous ML adoption in R&D Art. 6(1) AI Act: Device Route AI = medical device or safety component of device MDR / IVDR in Annex I AI Act High-risk if third-party assessed APPLIES FROM 2 AUG 2027 Art. 6(2) AI Act: Standalone Route Annex III AI Act (pharma-relevant): Biometrics, benefits, triage Scope follows intended use APPLIES FROM 2 AUG 2026 SCOPE UNSETTLED AT MARGIN HIGH-RISK Art. 8–15 AI Act requirements Conformity assessment Technical documentation Compliance Overlay AI Act : Art. 8–15, conformity MDR : Annex I (GSPR) GMP : Annex 11 (audit trails) GCP : Data integrity, safety Overlapping but non-identical obligations NO HARMONIZED STANDARDS YET (CEN-CENELEC JTC 21) Classification pathway Compliance obligation (cascading regulatory consequence)
Pharma R&D AI enters high-risk classification through either the device route (Art. 6(1) AI Act) or the standalone route (Art. 6(2) AI Act), with each triggering an overlapping but non-identical compliance stack.

2. The Threshold the Classification Assumes: Does the Act Reach R&D at All?

The classification analysis presupposes a prior question: whether the AI Act reaches a given research system at all. For pharmaceutical R&D, that premise is not automatic. The Act carves two exclusions out of its own scope that bear directly on the discovery and preclinical phases. Under Art. 2(6) AI Act, the Regulation does not apply to AI systems or models, including their output, developed and put into service for the sole purpose of scientific research and development. Under Art. 2(8) AI Act, it does not apply to research, testing, or development activity on AI systems or models before they are placed on the market or put into service. A large share of target identification, in-silico screening, and internal modeling plausibly sits inside one exclusion or the other, which means the August 2026 and August 2027 deadlines do not bite in the laboratory.5AI Act (n 2), Art. 2(6) (AI developed and put into service for the sole purpose of scientific research and development), Art. 2(8) (research, testing or development prior to placing on the market or putting into service) and Recital 25; on clinical-stage recapture cf. AI Act (n 2), Art. 60 (testing in real world conditions) and MDCG 2025-6 (n 3).

The exclusions are narrower than they first read. Recital 25 AI Act confines them: a system used for anything beyond pure research, or one that crosses from development into deployment, loses the benefit. The pivot in Art. 2(8) AI Act is sharper still. Its closing sentence withdraws the exclusion for testing in real-world conditions, and MDCG 2025-6 indicates that MDR clinical investigations and IVDR performance studies generally constitute exactly that. A diagnostic or decision-support model that is exempt while it is being built re-enters scope the moment it is tested on patients in a clinical investigation. The boundary the analysis most needs to locate is therefore not the August deadline but the line between development and the first real-world test.

For a US reader, the intuition carried over from domestic practice, that internal research tooling operates in a lightly governed space until a product is submitted, is half right and half dangerous. It holds for genuine discovery work that never leaves the research environment. It fails the moment the same model is repurposed toward a regulated output, because the AI Act fixes scope by use, not by the function that built the tool. The Regulation leaves open whether a model trained for discovery and later consulted in designing a clinical protocol still serves the sole purpose of research, and the answer turns on the facts of how the model is used.

3. High-Risk AI in Pharma R&D: The Compliance Requirements

For AI systems classified as high-risk, the AI Act imposes seven substantive requirements under Chapter III, Section 2 (Art. 9–15 AI Act), preceded by an Art. 8 AI Act chapeau that integrates them with existing Union harmonization procedures.6AI Act (n 2), Chapter III, Section 2 (Art. 8–15): Art. 8 (compliance chapeau), Art. 9 (risk management), Art. 10 (data governance), Art. 11 (technical documentation), Art. 12 (record-keeping), Art. 13 (transparency), Art. 14 (human oversight), Art. 15 (accuracy, robustness, cybersecurity). The requirements span risk management, data governance, transparency, human oversight, and cybersecurity. Compliance becomes complex where they meet pharmaceutical-specific regulatory obligations (GCP, GMP, pharmacovigilance), because the AI Act's requirements overlap with existing pharmaceutical quality frameworks without matching them.

For pharmaceutical R&D, several of these requirements present specific challenges. Art. 10 AI Act requires training datasets to have appropriate statistical properties for the intended purpose, including representativeness for the persons or groups to whom the system will apply. This intersects uncomfortably with known biases in clinical trial populations: an AI system trained predominantly on data from European or North American clinical trials may fail the representativeness standard if its intended purpose extends to broader populations, even if the underlying trial data met all applicable GCP requirements at the time of collection. Where that representativeness gap is to be closed by drawing on broader real-world health data, a second framework converges on the same problem: the European Health Data Space provides for the secondary use of electronic health data, including for the training and testing of AI systems, yet its secondary-use regime is scheduled to apply only from 2029. The data source that might one day satisfy Art. 10 AI Act is not operational on the timeline the high-risk obligations run to.7Regulation (EU) 2025/327 of the European Parliament and of the Council of 11 February 2025 on the European Health Data Space (EHDS Regulation) [2025] OJ L 2025/327; the secondary-use chapter lists training, testing and evaluation of AI systems among permitted purposes, with most secondary-use provisions applying from 2029.

The logging requirement under Art. 12 AI Act creates a tension with pharmaceutical data integrity obligations. EU GMP Annex 11 (Computerised Systems) already imposes audit trail requirements on computerized systems used in pharmaceutical manufacturing and quality control. The AI Act's logging requirements are broader in scope and differently structured, creating the prospect of parallel but non-identical logging obligations for the same AI system, depending on whether the system falls within GMP scope, AI Act scope, or both.

These requirements primarily bind providers (typically the AI developer or vendor), but deployers have duties of their own. Art. 26 AI Act requires the deployer to follow the provider's instructions for use, maintain human oversight, and retain the system's automatically generated logs for at least six months. Art. 50 AI Act adds transparency obligations toward natural persons interacting with the system. Art. 27 AI Act also requires a fundamental rights impact assessment, but only from deployers that are bodies governed by public law, that provide public services, or that run the narrow Annex III AI Act uses in creditworthiness and insurance. A commercial pharmaceutical company deploying clinical-research AI is generally none of those, so the much-discussed fundamental rights impact assessment usually does not attach to it at all. The assessment that does attach sits in a different instrument: processing clinical data through an AI system almost always triggers a data protection impact assessment under Art. 35 GDPR, and Art. 22 GDPR constrains decisions taken solely by automated means where an algorithm screens or excludes trial participants. Deployer status is the more common posture for pharmaceutical companies, and the load-bearing obligations are the Art. 26 AI Act oversight-and-logging duties and the GDPR assessment, not the fundamental rights impact assessment that most AI Act commentary foregrounds.8Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 on the protection of natural persons with regard to the processing of personal data (GDPR) [2016] OJ L119/1, Art. 35 (data protection impact assessment) and Art. 22 (automated individual decision-making); cf. AI Act (n 2), Art. 26, Art. 27 and Art. 50.

For most pharmaceutical deployers, the binding assessment is not the AI Act's fundamental-rights review but the data protection impact assessment the GDPR already required.

4. The MDR/AI Act Convergence: Dual Conformity Assessment

AI systems that qualify as medical devices are the category most immediately relevant to pharmaceutical companies developing companion diagnostics, clinical decision support tools, or software as a medical device (SaMD). For these systems, the AI Act's requirements come on top of the already substantial MDR obligations.

Under the AI Act as adopted, the framework does not create a separate conformity assessment procedure for AI-enabled medical devices. Instead, it integrates the AI Act requirements into the existing MDR conformity assessment pathway: notified bodies conducting MDR assessments must also verify compliance with the AI Act's high-risk requirements.9AI Act (n 2), Art. 6(1) and Art. 43(3); cf. European Commission proposal COM(2025) 836 final (Digital Omnibus on AI, 19 November 2025) clarifying integration into existing product safety frameworks. This integration is conceptually elegant but practically demanding: notified bodies must develop competence in both regulatory frameworks, and manufacturers must produce technical documentation that satisfies both the MDR's General Safety and Performance Requirements (GSPR, Annex I) and the AI Act's Chapter III obligations simultaneously. Few notified bodies are equipped to assess an AI-embedded device against both regimes, which tightens the device-route timeline: the additional year to August 2027 has to accommodate an assessment that only those few bodies can perform.

The November 2025 Digital Omnibus proposal, the Commission's response to industry concerns about implementation readiness, addresses some coordination issues but does not fundamentally simplify the dual assessment. The proposed amendments clarify that a single conformity assessment procedure covers both MDR and AI Act requirements for medical device AI, and that notified bodies may rely on the AI Act's harmonized standards (once adopted) as a basis for presumption of conformity. The proposal also contemplates linking application of the high-risk rules to standards availability, with a fallback timeline extending the standalone-system deadline to 2 December 2027 and the embedded-system deadline to 2 August 2028. Whether and in what form the proposal is adopted remains pending, and the harmonized standards themselves are still in development: CEN-CENELEC JTC 21 (Artificial Intelligence) has published working drafts but no final harmonized standards as of early 2026.10CEN-CENELEC JTC 21 (Artificial Intelligence), Work Program (2025) and accompanying progress reporting; Commission Implementing Decision C(2023) 3215 of 22 May 2023 (Standardisation Request M/593), repealed and replaced by Commission Implementing Decision C(2025) 3871 of 23 June 2025; no final harmonized standards published in the Official Journal as of February 2026.

For US pharma companies developing AI-enabled medical devices at German R&D sites, this creates a practical problem: the regulatory pathway requires notified body assessment against standards that do not yet exist in final form. The interim approach, demonstrating compliance through technical documentation aligned with draft standards and existing ISO/IEC frameworks (particularly ISO/IEC 42001:2023 for AI management systems and ISO 14971 for risk management), carries inherent uncertainty about whether the documentation will satisfy the final harmonized standards when they are published.

5. General-Purpose AI: The Obligations Already in Force

While the high-risk deadline dominates planning discussions, the AI Act's obligations for general-purpose AI (GPAI) models took effect on 2 August 2025, and as of early 2026, many pharmaceutical companies had not assessed how those obligations affect them.11AI Act (n 2), Art. 113(b) (Chapter V, including GPAI obligations under Art. 51–56, applicable from 2 August 2025); cf. Art. 111(3) (transitional provision deferring full compliance to 2 August 2027 for GPAI models placed on the market before 2 August 2025); on downstream modification or fine-tuning that makes a deployer a provider, Art. 25 and Recital 109 AI Act.

The GPAI obligations under Art. 51–56 AI Act apply to providers of general-purpose AI models, meaning the companies that develop and make available the foundation models. For pharmaceutical companies that deploy GPAI models (rather than develop them), the primary obligation is to ensure that their use of the GPAI model's outputs complies with downstream regulatory requirements. But the boundary between "provider" and "deployer" is not always clear in pharmaceutical R&D: a company that fine-tunes a foundation model on proprietary clinical data may, depending on the degree of modification, become a "provider" of a new AI model, with the corresponding obligations.

The practical risk is less about the GPAI model itself than about its integration into regulated processes. A large language model used internally for literature review carries a different regulatory risk from the same model integrated into a clinical trial protocol design workflow or a pharmacovigilance signal detection pipeline. The AI Act does not regulate the model in isolation; it regulates the system in context. In pharmaceutical R&D, AI system outputs frequently feed into regulated decisions: submissions to BfArM (Germany's Federal Institute for Drugs and Medical Devices), safety reports to EMA, clinical study reports supporting marketing authorization applications. A contract with a GPAI provider can allocate responsibility for model performance. It cannot allocate the regulatory consequence of a BfArM submission that relied on AI-generated analysis. That consequence attaches to the marketing authorization holder.

6. Liability Beyond the Administrative Fines

Administrative fines under Art. 99 AI Act, discussed in Section 9 below, are only one of the financial risks, and for a product company they are rarely the largest. The revised Product Liability Directive brings software and AI systems squarely within the definition of a product, extends to defects introduced by post-market updates and learning behavior, and introduces disclosure duties and rebuttable presumptions that ease a claimant's burden of proving defect and causation in technically complex cases. Member States must transpose it by 9 December 2026, inside the window in which the high-risk obligations begin to bite.12Directive (EU) 2024/2853 of the European Parliament and of the Council of 23 October 2024 on liability for defective products and repealing Council Directive 85/374/EEC (PLD) [2024] OJ L 2024/2853; brings software and AI systems within "product"; rebuttable presumptions of defectiveness and causation; transposition by 9 December 2026. A US reader familiar with domestic product-liability practice will recognize the general approach but not the burden-shifting: the presumptions run against the manufacturer where an AI system's opacity would otherwise defeat a claim.

The companion instrument that would have addressed fault-based AI liability, the proposed AI Liability Directive, has been withdrawn, so the product-liability regime carries civil liability for AI on its own, with gaps for purely economic loss and for harms outside the directive's defined damage categories.13Commission, 'Proposal for a Directive on adapting non-contractual civil liability rules to artificial intelligence (AI Liability Directive)' COM(2022) 496 final, listed for withdrawal in the Commission Work Programme 2025 and subsequently withdrawn. For many systems, an AI-driven adverse outcome in a clinical or diagnostic setting is a more likely source of loss than an AI Act enforcement action, and it reaches the US balance sheet the way any product-liability claim does.

7. The German Implementation Context: Concurrent Frameworks, Incomplete Authority

Germany's implementation of the AI Act occurs against the backdrop of several concurrent regulatory developments that amplify the compliance burden for pharmaceutical R&D operations.

The German standard contractual clauses for commercial clinical trials of medicinal products (Standardvertragsklauselverordnung, StandVKlV; distinct from the GDPR Standard Contractual Clauses for international data transfers), applicable to contracts concluded from 18 December 2025, lay down data governance terms that the sponsor and the trial site must use in their clinical trial agreement unless they agree to depart from them, and that overlap with the AI Act's data governance obligations under Art. 10 AI Act. Where clinical trial data is used to train or validate AI systems, the contractual framework governing that data must accommodate both the StandVKlV clauses and the AI Act's data quality requirements. The two do not mesh fully: the StandVKlV clauses address data controllership and processing purposes, while the AI Act addresses data representativeness and bias.14Verordnung über Standardvertragsklauseln für die Durchführung klinischer Prüfungen (Standardvertragsklauselverordnung, StandVKlV), Art. 1 of the Verordnung zur Vereinfachung der Durchführung und Genehmigung klinischer Prüfungen, BGBl. 2025 I Nr. 215, read with § 42d(2) Arzneimittelgesetz (AMG), under which sponsor and site must use the clauses unless they agree to depart from them, applicable to contracts concluded from 18 December 2025; cf. AI Act (n 2), Art. 10.

The joint BfArM/Paul-Ehrlich-Institut application portal on PharmNet.Bund, operational since 1 July 2025 under the Medizinforschungsgesetz (MFG, BGBl. 2024 I Nr. 324, in force 30 October 2024), offers regulatory scientific advice on medical device and pharmaceutical questions, which may include AI classification questions where the system is part of a regulated product. As is standard for regulatory scientific advice, the output is non-binding; capacity is limited, and the interplay between BfArM's advice on AI classification and the AI Act's conformity assessment pathway, administered through notified bodies, not BfArM, creates a coordination gap that companies must bridge themselves. The result is a regulatory-advice channel that addresses one piece of the compliance puzzle but cannot deliver binding clarity on the AI Act question.

As of early 2026, Germany has set up AI Act enforcement only in part. The AI Act required Member States to designate national competent authorities for AI Act supervision by 2 August 2025 under Art. 70 AI Act. Germany did not meet that deadline. The Bundesnetzagentur (the Federal Network Agency) has set up a preparatory KI-Service Desk (an AI service desk) and is earmarked as the prospective national supervisory authority, but its formal statutory designation awaits dedicated implementing legislation. How supervision of AI systems at the intersection of both frameworks is divided between the Bundesnetzagentur (AI Act) and BfArM (pharmaceutical and medical device regulation) is settled only in part. For AI in products such as medical devices, Art. 74(3) AI Act assigns market surveillance to the authority already responsible for those products, unless a Member State designates another; for other systems, the division remains unresolved.15AI Act (n 2), Art. 70 (designation of national competent authorities; 2 August 2025 deadline under Art. 113(b), missed by Germany pending dedicated implementing legislation); Bundesnetzagentur, 'KI-Service Desk' (3 July 2025); for AI systems covered by Union harmonization legislation in Annex I Section A, market-surveillance competence is allocated to the relevant sectoral authority under Art. 74 AI Act. A US pharma company deploying an AI system in clinical trials at a German site may face supervisory questions from two authorities with different mandates and potentially different interpretations of the same regulatory text.

8. Beyond the EU: The FDA Baseline and the Swiss Parent

A US pharmaceutical company reading this against its own regulatory map is anchored in the FDA's approach to AI, which by early 2026 runs through the FDA's draft guidance on the use of artificial intelligence to support regulatory decision-making for drug and biological products and its risk-based, context-of-use credibility framework.16FDA, 'Considerations for the Use of Artificial Intelligence to Support Regulatory Decision-Making for Drug and Biological Products' (draft guidance, January 2025), establishing a risk-based credibility-assessment framework keyed to the model's context of use. The instinct to treat AI Act conformity as a European recharacterization of that framework is the trap. The FDA's model is risk-based, specific to a context of use, oriented to a submission, and issued as non-binding draft guidance; the AI Act is horizontal, fixed by a risk classification of the system's intended purpose rather than by a submission-specific context of use, oriented to a conformity assessment, and backed by binding fines. Documentation built to satisfy the FDA's credibility framework does not transfer into an AI Act technical file, and showing that a model is credible for a defined context of use does not establish that it meets the Art. 10 AI Act data-governance or Art. 14 AI Act human-oversight obligations. The two regimes ask different questions, and satisfying one leaves the other open.

If the group runs its European business through a Swiss company, for instance one headquartered in Basel, that company stands in a third position. Switzerland has decided against a horizontal AI statute, opting for a sector-specific approach and the ratification of the Council of Europe's AI Convention, which it signed in March 2025.17Schweizerischer Bundesrat, 'Auslegeordnung zur KI-Regulierung: der Bundesrat will die KI-Konvention des Europarats ratifizieren' (Medienmitteilung, 12 February 2025); Council of Europe Framework Convention on Artificial Intelligence and Human Rights, Democracy and the Rule of Law (CETS No. 225, 2024), signed by Switzerland on 27 March 2025; on Swiss data protection, Bundesgesetz über den Datenschutz (DSG) vom 25. September 2020 (SR 235.1). A Swiss parent therefore faces no domestic AI act of the kind its German subsidiary must satisfy. That asymmetry is deceptive, because the AI Act reaches providers and deployers established outside the EU where the output of their AI systems is used within it. A model run from a Swiss head office but feeding a German clinical or regulatory process is not outside the Regulation by virtue of its location, and the question of which group entity is the provider and which the deployer does not resolve along the corporate-structure lines a US parent might assume.

9. Building the Compliance Program: Inventory, Timeline, and Cascade

Providers of standalone high-risk AI systems (Annex III AI Act) used in the EU, including at German R&D sites, must have conformity assessments completed, technical documentation prepared, and quality management systems operational by 2 August 2026, and pharmaceutical companies that deploy such systems must by then meet their Art. 26 AI Act oversight and logging duties. AI systems classified as high-risk through the medical device route under Art. 6(1) AI Act face the same substantive requirements but with an application date of 2 August 2027 (Art. 113(c) AI Act). The extra year is less generous than it appears: the dual MDR/AI Act conformity assessment for device-route systems is substantially more demanding, and the notified body capacity constraints are already apparent. For AI systems already in use under either pathway, the work is a retroactive compliance program that has to be fitted to systems already in operation without disrupting ongoing R&D activities. Art. 111(2) AI Act narrows that program: a high-risk system placed on the market or put into service before 2 August 2026 falls under the Regulation only once its design changes significantly, and systems intended for use by public authorities must comply by 2 August 2030, so the retroactive work reaches the systems a company changes rather than every system it runs.

Most pharmaceutical companies lack a comprehensive inventory of the AI and machine learning systems deployed across their EU operations. AI systems were adopted incrementally, often by individual R&D teams, without centralized registration or classification, because until the AI Act, no regulatory framework required it. The retroactive discovery that an organization does not know how many AI systems it operates, what risk tier they fall into, or which regulatory overlays (MDR, IVDR, GMP, GCP) apply to each is itself a compliance finding. And the scope of that discovery exercise (how broadly "AI system" is defined under Art. 3(1) AI Act, whether rule-based decision tools qualify, where the boundary falls between a validated statistical model and an AI system) is not settled by the regulation or the guidance published to date.

The penalty framework sets the financial stakes. Administrative fines under the AI Act reach up to EUR 35 million or 7% of the preceding financial year's total worldwide annual turnover, whichever is higher, for violations of the prohibited practices provisions; up to EUR 15 million or 3% for other violations, including non-compliance with high-risk requirements.18AI Act (n 2), Art. 99 (fines); the 7% threshold applies to prohibited AI practices under Art. 5; the 3% threshold applies to non-compliance with obligations for high-risk AI systems under Art. 8–15. For a large US pharmaceutical company, 3% of worldwide turnover means a possible fine running to nine figures.

The larger risk is operational. An AI system found non-compliant with the AI Act's high-risk requirements after August 2026 may have to be withdrawn from use, and if it is part of an ongoing clinical trial or a marketed medical device, the withdrawal causes regulatory problems for that trial or device well beyond the AI Act itself. The intersection between AI Act non-compliance and GCP, GMP, or MDR obligations means that an AI Act enforcement action can trigger cascading regulatory consequences across multiple frameworks simultaneously.

Regulatory affairs may understand the AI Act classification; IT governance may understand the technical documentation requirements; neither may understand how their assumptions interact, and the compliance program may memorialize that gap rather than bridge it. The same indeterminacy runs along the value chain: the line between provider and deployer that decides who carries the Art. 8–15 AI Act obligations is movable, because a deployer that fine-tunes or repurposes a system can become its provider, and the allocation a contract records may not match the allocation the Regulation imposes.

The August 2026 deadline turns a strategic question into an operational one: which of a company's AI systems the Act reaches, and whether the compliance structures they need exist yet.

REFERENCES

01
Pistoia Alliance, 'Pistoia Alliance Survey Exposes AI Knowledge Gap' (February 2024), reporting that 9% of 125 life-science professionals surveyed self-reported knowing EU and US AI regulations well, with 35% reporting no understanding at all (webinar poll, February 2024); cf. Deloitte Insights, 'The Rise of Artificial Intelligence in Biopharma' (accessed February 2026) (documenting near-ubiquitous AI/ML deployment across large-cap pharmaceutical R&D pipelines). ↩
02
Regulation (EU) 2024/1689 of the European Parliament and of the Council of 13 June 2024 laying down harmonised rules on artificial intelligence and amending Regulations (EC) No 300/2008, (EU) No 167/2013, (EU) No 168/2013, (EU) 2018/858, (EU) 2018/1139 and (EU) 2019/2144 and Directives 2014/90/EU, (EU) 2016/797 and (EU) 2020/1828 (AI Act) [2024] OJ L 2024/1689, 12.7.2024. ↩
03
AI Act (n 2), Art. 6(1) (classification rules for high-risk AI systems, requiring both Annex I coverage and a third-party conformity assessment requirement under that Annex I legislation) and Annex I, Section A, points 11 (Regulation (EU) 2017/745 [2017] OJ L117/1 (MDR)) and 12 (Regulation (EU) 2017/746 [2017] OJ L117/176 (IVDR)); cf. AIB 2025-1 / MDCG 2025-6, Interplay between the Medical Devices Regulation (MDR) & In vitro Diagnostic Medical Devices Regulation (IVDR) and the Artificial Intelligence Act (AIA) (Artificial Intelligence Board and Medical Device Coordination Group, June 2025). ↩
04
AI Act (n 2), Art. 6(2) and Annex III (pharma-adjacent points: 1 (biometrics), 5(a) (eligibility for essential public assistance benefits and services, including healthcare) and 5(d) (emergency healthcare patient triage)); Art. 6(3) (carve-out subject to four gating conditions) and its closing subparagraph (an Annex III system performing profiling of natural persons is always high-risk); the umbrella "significant risk" standard is not defined in Art. 3. ↩
05
AI Act (n 2), Art. 2(6) (AI systems and models developed and put into service for the sole purpose of scientific research and development), Art. 2(8) (research, testing or development activity prior to placing on the market or putting into service, excluding testing in real world conditions) and Recital 25; on the recapture of clinical-stage testing, Art. 60 (testing of high-risk AI systems in real world conditions) and MDCG 2025-6 (n 3). ↩
06
AI Act (n 2), Chapter III, Section 2 (Art. 8–15): Art. 8 (compliance with the requirements; integration chapeau for products covered by Annex I Section A), Art. 9 (risk management system), Art. 10 (data and data governance), Art. 11 (technical documentation), Art. 12 (record-keeping), Art. 13 (transparency and provision of information to deployers), Art. 14 (human oversight), Art. 15 (accuracy, robustness and cybersecurity). ↩
07
Regulation (EU) 2025/327 of the European Parliament and of the Council of 11 February 2025 on the European Health Data Space (EHDS Regulation) [2025] OJ L 2025/327; the secondary-use chapter lists the training, testing and evaluation of AI systems among permitted secondary uses of electronic health data, with most secondary-use provisions applying from 2029. ↩
08
Regulation (EU) 2016/679 of the European Parliament and of the Council of 27 April 2016 on the protection of natural persons with regard to the processing of personal data and on the free movement of such data, and repealing Directive 95/46/EC (General Data Protection Regulation, GDPR) [2016] OJ L119/1, Art. 35 (data protection impact assessment) and Art. 22 (automated individual decision-making, including profiling); cf. AI Act (n 2), Art. 26, Art. 27 and Art. 50. ↩
09
AI Act (n 2), Art. 6(1) and Art. 43(3) (conformity assessment for high-risk AI systems that are products or safety components of products); European Commission, 'Proposal for a Regulation amending Regulations (EU) 2024/1689 and (EU) 2018/1139 as regards the simplification of the implementation of harmonised rules on artificial intelligence' COM(2025) 836 final (19 November 2025) (Digital Omnibus on AI). ↩
10
CEN-CENELEC JTC 21 (Artificial Intelligence), Work Program (2025) and accompanying progress reporting; Commission Implementing Decision C(2023) 3215 of 22 May 2023 on a standardization request to CEN/CENELEC on AI (M/593), repealed and replaced by Commission Implementing Decision C(2025) 3871 of 23 June 2025; as of February 2026, no final harmonized standards have been published in the Official Journal. ↩
11
AI Act (n 2), Art. 113(b) (Chapter V, including obligations for providers of general-purpose AI models under Art. 51–56, applicable from 2 August 2025); Art. 53 (provider obligations including transparency, technical documentation under Annex XI, and a public training-data summary); Art. 55 (obligations for GPAI models with systemic risk); Art. 111(3) (transitional provision for GPAI models placed on the market before 2 August 2025, deferring full compliance to 2 August 2027); on downstream modification or fine-tuning that brings provider obligations within scope, Art. 25 (responsibilities along the AI value chain) and Recital 109. ↩
12
Directive (EU) 2024/2853 of the European Parliament and of the Council of 23 October 2024 on liability for defective products and repealing Council Directive 85/374/EEC (PLD) [2024] OJ L 2024/2853; brings software and AI systems within the definition of "product", introduces disclosure duties and rebuttable presumptions of defectiveness and causation, with a Member State transposition deadline of 9 December 2026. ↩
13
European Commission, 'Proposal for a Directive of the European Parliament and of the Council on adapting non-contractual civil liability rules to artificial intelligence (AI Liability Directive)' COM(2022) 496 final; listed for withdrawal in the Commission Work Programme 2025 and subsequently withdrawn. ↩
14
Verordnung über Standardvertragsklauseln für die Durchführung klinischer Prüfungen (Standardvertragsklauselverordnung, StandVKlV), Art. 1 of the Verordnung zur Vereinfachung der Durchführung und Genehmigung klinischer Prüfungen, BGBl. 2025 I Nr. 215, read with § 42d(2) Arzneimittelgesetz (AMG), under which sponsor and site must use the clauses unless they agree to depart from them, applicable to contracts for commercial clinical trials of medicinal products concluded from 18 December 2025; Anlage 2 (joint controller arrangements under Art. 26 GDPR; the StandVKlV applies to commercial trials only); cf. AI Act (n 2), Art. 10 (data and data governance for high-risk AI systems). ↩
15
AI Act (n 2), Art. 70 (designation of national competent authorities and single point of contact; 2 August 2025 deadline under Art. 113(b), missed by Germany pending dedicated implementing legislation); Bundesnetzagentur, 'KI-Service Desk' (3 July 2025); for AI systems that are products covered by Union harmonization legislation listed in Annex I Section A (including MDR and IVDR), market-surveillance competence is allocated to the sectoral authority designated under those legal acts pursuant to Art. 74 (in Germany, BfArM for medical devices and PEI for medicinal products with embedded AI), while the Bundesnetzagentur covers the residual horizontal AI Act supervision. ↩
16
FDA, 'Considerations for the Use of Artificial Intelligence to Support Regulatory Decision-Making for Drug and Biological Products' (draft guidance, January 2025), proposing a risk-based, seven-step credibility-assessment framework keyed to a model's context of use; comment period closed April 2025. ↩
17
Schweizerischer Bundesrat, 'Auslegeordnung zur KI-Regulierung: der Bundesrat will die KI-Konvention des Europarats ratifizieren' (Medienmitteilung, 12 February 2025); Council of Europe Framework Convention on Artificial Intelligence and Human Rights, Democracy and the Rule of Law (CETS No. 225, opened for signature 5 September 2024), signed by Switzerland on 27 March 2025; Bundesgesetz über den Datenschutz (Datenschutzgesetz, DSG) vom 25. September 2020 (SR 235.1). ↩
18
AI Act (n 2), Art. 99 (administrative fines): Art. 99(3) (up to EUR 35 million or 7% for violations of Art. 5 – prohibited AI practices); Art. 99(4) (up to EUR 15 million or 3% for non-compliance with operator obligations enumerated therein, including provider obligations under Art. 16 to comply with the high-risk requirements set out in Art. 8–15); Art. 99(5) (up to EUR 7.5 million or 1% for supply of incorrect information to authorities). ↩

GAWEL Legal advises pharmaceutical companies on the EU AI Act duties attached to the AI systems they use in research and development.

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